J3_4V4H_022
3D structure
- PDB id
- 4V4H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4H_022 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.0763
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V4H|1|BB|C|2091
4V4H|1|BB|U|2092
4V4H|1|BB|G|2093
*
4V4H|1|BB|C|2196
4V4H|1|BB|U|2197
4V4H|1|BB|A|2198
4V4H|1|BB|A|2199
4V4H|1|BB|C|2200
*
4V4H|1|BB|G|2223
4V4H|1|BB|G|2224
4V4H|1|BB|A|2225
4V4H|1|BB|C|2226
4V4H|1|BB|A|2227
4V4H|1|BB|G|2228
Current chains
- Chain BB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 50S RIBOSOMAL PROTEIN L2
- Chain BH
- 50S RIBOSOMAL PROTEIN L9
- Chain BZ
- 50S RIBOSOMAL PROTEIN L31
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: