J3_4V4H_041

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4H_041 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.111

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

4V4H|1|DB|G|30
4V4H|1|DB|C|31
*
4V4H|1|DB|G|474
4V4H|1|DB|C|475
4V4H|1|DB|G|476
4V4H|1|DB|A|477
4V4H|1|DB|A|478
4V4H|1|DB|A|479
4V4H|1|DB|A|480
4V4H|1|DB|G|481
*
4V4H|1|DB|C|509
4V4H|1|DB|C|510

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DQ

50S RIBOSOMAL PROTEIN L20

Chain DU

50S RIBOSOMAL PROTEIN L24