Motif J3_60031.2 Version J3_60031.2 of this group appears in releases 3.95 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 2-3 | 4-8 | 5-9 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7A0S_001 | 7A0S | 0.1156 | 0 | X | LSU rRNA | G | 30 | C | 31 | * | G | 485 | U | 486 | G | 487 | A | 488 | A | 489 | A | 490 | A | 491 | G | 492 | * | C | 519 | C | 520 | cWW | cWW | tWH | ntSH | cWW |
| 2 | J3_5J7L_036 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | G | 30 | C | 31 | * | G | 474 | C | 475 | G | 476 | A | 477 | A | 478 | A | 479 | A | 480 | G | 481 | * | C | 509 | C | 510 | cWW | cWW | ntWH | tSH | cWW |
| 3 | J3_9DFE_001 | 9DFE | 0.0919 | 0 | 1A | LSU rRNA | G | 30 | C | 31 | * | G | 474 | U | 475 | G | 476 | A | 477 | A | 478 | A | 479 | A | 480 | G | 481 | * | C | 509 | C | 510 | cWW | cWW | tWH | tSH | cWW |
| 4 | J3_4WF9_010 | 4WF9 | 0.1050 | 0 | X | LSU rRNA | G | 30 | C | 31 | * | G | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | A | 526 | G | 527 | * | C | 554 | C | 555 | cWW | cWW | tWH | ntSH | cWW |
| 5 | J3_8P9A_046 | 8P9A | 0.1250 | 0 | AT+AR | 5.8S rRNA | C | 19 | U | 20 | * | A | 369 | U | 370 | G | 371 | A | 372 | A | 373 | A | 374 | A | 375 | G | 376 | * | C | 403 | G | 404 | cWW | cWW | tWH | tSH | cWW |
| 6 | J3_8CRE_005 | 8CRE | 0.1251 | 0 | 4+1 | 5.8S rRNA | C | 19 | U | 20 | * | A | 369 | U | 370 | G | 371 | A | 372 | A | 373 | A | 374 | A | 375 | G | 376 | * | C | 403 | G | 404 | cWW | cWW | tWH | tSH | cWW |
| 7 | J3_4V9F_011 | 4V9F | 0.1286 | 0 | 0 | LSU rRNA | U | 27 | G | 28 | * | C | 480 | U | 481 | G | 482 | C | 483 | A | 484 | A | 485 | A | 486 | G | 487 | * | C | 515 | A | 516 | cWW | cWW | tWH | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GUGAAAAG*CC | 3 |
| AUGAAAAG*CG*CU | 2 |
| GC*GCGAAAAG*CC | 1 |
| UG*CUGCAAAG*CA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UGAAAA* | 3 |
| UGAAAA** | 2 |
| *CGAAAA* | 1 |
| *UGCAAA* | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Heat map statistics
- Min 0.07 | Avg 0.11 | Max 0.17
Coloring options: