Motif J3_60031.2 Version J3_60031.2 of this group appears in releases 3.95 to 3.97

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2	break		3		4		5		6		7		8		9		10	break		11		12	1-12	2-3	4-8	5-9	10-11
1	J3_4V9F_011	4V9F	0.1286	0	0	LSU rRNA	U	27	G	28	*	C	480	U	481	G	482	C	483	A	484	A	485	A	486	G	487	*	C	515	A	516	cWW	cWW	tWH	tSH	cWW
2	J3_8CRE_005	8CRE	0.1251	0	4+1	5.8S rRNA	C	19	U	20	*	A	369	U	370	G	371	A	372	A	373	A	374	A	375	G	376	*	C	403	G	404	cWW	cWW	tWH	tSH	cWW
3	J3_8P9A_046	8P9A	0.1250	0	AT+AR	5.8S rRNA	C	19	U	20	*	A	369	U	370	G	371	A	372	A	373	A	374	A	375	G	376	*	C	403	G	404	cWW	cWW	tWH	tSH	cWW
4	J3_4WF9_010	4WF9	0.1050	0	X	LSU rRNA	G	30	C	31	*	G	520	U	521	G	522	A	523	A	524	A	525	A	526	G	527	*	C	554	C	555	cWW	cWW	tWH	ntSH	cWW
5	J3_9DFE_001	9DFE	0.0919	0	1A	LSU rRNA	G	30	C	31	*	G	474	U	475	G	476	A	477	A	478	A	479	A	480	G	481	*	C	509	C	510	cWW	cWW	tWH	tSH	cWW
6	J3_5J7L_036	5J7L	0.0000	0	DA	LSU rRNA	G	30	C	31	*	G	474	C	475	G	476	A	477	A	478	A	479	A	480	G	481	*	C	509	C	510	cWW	cWW	ntWH	tSH	cWW
7	J3_7A0S_001	7A0S	0.1156	0	X	LSU rRNA	G	30	C	31	*	G	485	U	486	G	487	A	488	A	489	A	490	A	491	G	492	*	C	519	C	520	cWW	cWW	tWH	ntSH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCGUGAAAAGCC	3
AUGAAAAGCGCU	2
UGCUGCAAAGCA	1
GCGCGAAAAGCC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAAAA	3
UGAAAA**	2
UGCAAA	1
CGAAAA	1

Release history

Release	3.95	3.96	3.97
Date	2025-03-26	2025-04-23	2025-05-21
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-cWW-cWW-tWH-tSH-F-F
Heat map statistics: Min 0.07 | Avg 0.11 | Max 0.17

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Coloring options: Nucleotide numbers

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