J3_4V4I_024

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGC*GGAC*GGAG

Length

11 nucleotides

Bulged bases

4V4I|1|y|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4I_024 not in the Motif Atlas

Homologous match to J3_5J7L_010

Geometric discrepancy: 0.5813

The information below is about J3_5J7L_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.4

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V4I|1|y|C|1116
4V4I|1|y|G|1117
4V4I|1|y|C|1118
*
4V4I|1|y|G|1155
4V4I|1|y|G|1156
4V4I|1|y|A|1157
4V4I|1|y|C|1158
*
4V4I|1|y|G|1181
4V4I|1|y|G|1182
4V4I|1|y|A|1183
4V4I|1|y|G|1184

Current chains

Chain y

16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain o

30S ribosomal protein S14