J3_4V4J_004

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V4J|1|w|G|686, 4V4J|1|w|G|792, 4V4J|1|w|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4J_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.2027

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V4J|1|w|C|683
4V4J|1|w|G|684
4V4J|1|w|A|685
4V4J|1|w|G|686
4V4J|1|w|C|687
4V4J|1|w|U|688
4V4J|1|w|A|689
*
4V4J|1|w|U|773
4V4J|1|w|A|774
4V4J|1|w|G|775
*
4V4J|1|w|C|791
4V4J|1|w|G|792
4V4J|1|w|A|793
4V4J|1|w|G|794

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain Z

50S ribosomal protein L34