J3_4V4J_014
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CCAUAG*CGC*GUCG
- Length
- 13 nucleotides
- Bulged bases
- 4V4J|1|x|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4J|1|x|C|11
4V4J|1|x|C|12
4V4J|1|x|A|13
4V4J|1|x|U|14
4V4J|1|x|A|15
4V4J|1|x|G|16
*
4V4J|1|x|C|68
4V4J|1|x|G|69
4V4J|1|x|C|70
*
4V4J|1|x|G|106
4V4J|1|x|U|107
4V4J|1|x|C|108
4V4J|1|x|G|109
Current chains
- Chain x
- 5S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain M
- 50S ribosomal protein L18
- Chain T
- 50S ribosomal protein L25
- Chain U
- 50S ribosomal protein L27
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