3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
CGC*GGAC*GGAG
Length
11 nucleotides
Bulged bases
4V4J|1|y|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4J_025 not in the Motif Atlas
Homologous match to J3_4LFB_008
Geometric discrepancy: 0.4542
The information below is about J3_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82365.4
Basepair signature
cWW-F-cWW-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4V4J|1|y|C|1116
4V4J|1|y|G|1117
4V4J|1|y|C|1118
*
4V4J|1|y|G|1155
4V4J|1|y|G|1156
4V4J|1|y|A|1157
4V4J|1|y|C|1158
*
4V4J|1|y|G|1181
4V4J|1|y|G|1182
4V4J|1|y|A|1183
4V4J|1|y|G|1184

Current chains

Chain y
16S RNA

Nearby chains

Chain c
30S ribosomal protein S2
Chain j
30S ribosomal protein S9
Chain o
30S ribosomal protein S14 type Z

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