J3_4V4P_008

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CUCAG*CGGAGAG*UAGAAG

Length

18 nucleotides

Bulged bases

4V4P|1|AA|U|2296, 4V4P|1|AA|G|2319, 4V4P|1|AA|G|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|AA|C|2295
4V4P|1|AA|U|2296
4V4P|1|AA|C|2297
4V4P|1|AA|A|2298
4V4P|1|AA|G|2299
*
4V4P|1|AA|C|2317
4V4P|1|AA|G|2318
4V4P|1|AA|G|2319
4V4P|1|AA|A|2320
4V4P|1|AA|G|2321
4V4P|1|AA|A|2322
4V4P|1|AA|G|2323
*
4V4P|1|AA|U|2332
4V4P|1|AA|A|2333
4V4P|1|AA|G|2334
4V4P|1|AA|A|2335
4V4P|1|AA|A|2336
4V4P|1|AA|G|2337

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L27

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AG

50S ribosomal protein L5

Chain AQ

50S ribosomal protein L18

Chain BC

Transfer RNA; tRNA