3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
GC*GCGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4Q_041 not in the Motif Atlas
Homologous match to J3_5J7L_036
Geometric discrepancy: 0.121
The information below is about J3_5J7L_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_60031.2
Basepair signature
cWW-cWW-cWW-tWH-tSH-F-F
Number of instances in this motif group
7

Unit IDs

4V4Q|1|DB|G|30
4V4Q|1|DB|C|31
*
4V4Q|1|DB|G|474
4V4Q|1|DB|C|475
4V4Q|1|DB|G|476
4V4Q|1|DB|A|477
4V4Q|1|DB|A|478
4V4Q|1|DB|A|479
4V4Q|1|DB|A|480
4V4Q|1|DB|G|481
*
4V4Q|1|DB|C|509
4V4Q|1|DB|C|510

Current chains

Chain DB
23S ribosomal RNA

Nearby chains

Chain DQ
50S ribosomal protein L20
Chain DU
50S ribosomal protein L24

Coloring options:


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