J3_4V4Q_041
3D structure
- PDB id
- 4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- GC*GCGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4Q_041 not in the Motif Atlas
- Homologous match to J3_5J7L_036
- Geometric discrepancy: 0.121
- The information below is about J3_5J7L_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V4Q|1|DB|G|30
4V4Q|1|DB|C|31
*
4V4Q|1|DB|G|474
4V4Q|1|DB|C|475
4V4Q|1|DB|G|476
4V4Q|1|DB|A|477
4V4Q|1|DB|A|478
4V4Q|1|DB|A|479
4V4Q|1|DB|A|480
4V4Q|1|DB|G|481
*
4V4Q|1|DB|C|509
4V4Q|1|DB|C|510
Current chains
- Chain DB
- 23S ribosomal RNA
Nearby chains
- Chain DQ
- 50S ribosomal protein L20
- Chain DU
- 50S ribosomal protein L24
Coloring options: