3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4Q_048 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.081
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn in J3
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

4V4Q|1|DB|C|2091
4V4Q|1|DB|U|2092
4V4Q|1|DB|G|2093
*
4V4Q|1|DB|C|2196
4V4Q|1|DB|U|2197
4V4Q|1|DB|A|2198
4V4Q|1|DB|A|2199
4V4Q|1|DB|C|2200
*
4V4Q|1|DB|G|2223
4V4Q|1|DB|G|2224
4V4Q|1|DB|A|2225
4V4Q|1|DB|C|2226
4V4Q|1|DB|A|2227
4V4Q|1|DB|G|2228

Current chains

Chain DB
23S ribosomal RNA

Nearby chains

Chain DC
50S ribosomal protein L2
Chain DH
50S ribosomal protein L9
Chain DZ
50S ribosomal protein L31

Coloring options:


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