J3_4V4R_032
3D structure
- PDB id
- 4V4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.9 Å
Loop
- Sequence
- GC*GUGAAAAGAACC*GGAGUGAAAUAGAGCC
- Length
- 30 nucleotides
- Bulged bases
- 4V4R|1|BA|U|499, 4V4R|1|BA|G|500, 4V4R|1|BA|U|504, 4V4R|1|BA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4R_032 not in the Motif Atlas
- Geometric match to J3_4V9F_012
- Geometric discrepancy: 0.2255
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V4R|1|BA|G|30
4V4R|1|BA|C|31
*
4V4R|1|BA|G|474
4V4R|1|BA|U|475
4V4R|1|BA|G|476
4V4R|1|BA|A|477
4V4R|1|BA|A|478
4V4R|1|BA|A|479
4V4R|1|BA|A|480
4V4R|1|BA|G|481
4V4R|1|BA|A|482
4V4R|1|BA|A|483
4V4R|1|BA|C|484
4V4R|1|BA|C|485
*
4V4R|1|BA|G|495
4V4R|1|BA|G|496
4V4R|1|BA|A|497
4V4R|1|BA|G|498
4V4R|1|BA|U|499
4V4R|1|BA|G|500
4V4R|1|BA|A|501
4V4R|1|BA|A|502
4V4R|1|BA|A|503
4V4R|1|BA|U|504
4V4R|1|BA|A|505
4V4R|1|BA|G|506
4V4R|1|BA|A|507
4V4R|1|BA|G|508
4V4R|1|BA|C|509
4V4R|1|BA|C|510
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BU
- 50S ribosomal protein L20
- Chain BW
- 50S ribosomal protein L22
- Chain BY
- 50S ribosomal protein 24
Coloring options: