J3_4V4S_032
3D structure
- PDB id
- 4V4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.76 Å
Loop
- Sequence
- AUUUAGCU*AGCGCCAGACUGAAGAUCUGGAGGUCC*GAAU
- Length
- 39 nucleotides
- Bulged bases
- 4V4S|1|AV|U|8, 4V4S|1|AV|U|47, 4V4S|1|AV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4S|1|AV|A|5
4V4S|1|AV|U|6
4V4S|1|AV|U|7
4V4S|1|AV|U|8
4V4S|1|AV|A|9
4V4S|1|AV|G|10
4V4S|1|AV|C|11
4V4S|1|AV|U|12
*
4V4S|1|AV|A|23
4V4S|1|AV|G|24
4V4S|1|AV|C|25
4V4S|1|AV|G|26
4V4S|1|AV|C|27
4V4S|1|AV|C|28
4V4S|1|AV|A|29
4V4S|1|AV|G|30
4V4S|1|AV|A|31
4V4S|1|AV|C|32
4V4S|1|AV|U|33
4V4S|1|AV|G|34
4V4S|1|AV|A|35
4V4S|1|AV|A|36
4V4S|1|AV|G|37
4V4S|1|AV|A|38
4V4S|1|AV|U|39
4V4S|1|AV|C|40
4V4S|1|AV|U|41
4V4S|1|AV|G|42
4V4S|1|AV|G|43
4V4S|1|AV|A|44
4V4S|1|AV|G|45
4V4S|1|AV|G|46
4V4S|1|AV|U|47
4V4S|1|AV|C|48
4V4S|1|AV|C|49
*
4V4S|1|AV|G|65
4V4S|1|AV|A|66
4V4S|1|AV|A|67
4V4S|1|AV|U|68
Current chains
- Chain AV
- P-site tRNA (Phe)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S ribosomal protein S9
- Chain AM
- 30S ribosomal protein S13
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- 5'-D(*AP*UP*GP*UP*UP*CP*UP*AP*GP*AP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3'
- Chain AY
- Peptide chain release factor 2
- Chain B0
- 50S ribosomal protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S ribosomal protein L16
Coloring options: