J3_4V4S_040

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CCCAUAGCG*CAGCG*UCGG

Length

18 nucleotides

Bulged bases

4V4S|1|BB|C|12, 4V4S|1|BB|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4S|1|BB|C|10
4V4S|1|BB|C|11
4V4S|1|BB|C|12
4V4S|1|BB|A|13
4V4S|1|BB|U|14
4V4S|1|BB|A|15
4V4S|1|BB|G|16
4V4S|1|BB|C|17
4V4S|1|BB|G|18
*
4V4S|1|BB|C|65
4V4S|1|BB|A|66
4V4S|1|BB|G|67
4V4S|1|BB|C|68
4V4S|1|BB|G|69
*
4V4S|1|BB|U|107
4V4S|1|BB|C|108
4V4S|1|BB|G|109
4V4S|1|BB|G|110

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5

Chain BS

50S ribosomal protein L18

Chain BZ

50S ribosomal protein CTC