J3_4V4T_023

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V4T|1|BA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4T_023 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1792

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4V4T|1|BA|C|2517
4V4T|1|BA|A|2518
4V4T|1|BA|U|2519
4V4T|1|BA|C|2520
*
4V4T|1|BA|G|2545
4V4T|1|BA|U|2546
4V4T|1|BA|U|2547
*
4V4T|1|BA|A|2561
4V4T|1|BA|U|2562
4V4T|1|BA|U|2563
4V4T|1|BA|A|2564
4V4T|1|BA|A|2565
4V4T|1|BA|A|2566
4V4T|1|BA|G|2567

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BO

50S ribosomal protein L14