J3_4V4T_044
3D structure
- PDB id
- 4V4T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.46 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4V4T|1|BA|U|499, 4V4T|1|BA|G|500, 4V4T|1|BA|U|504, 4V4T|1|BA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4T_044 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2977
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4V4T|1|BA|G|30
4V4T|1|BA|C|31
*
4V4T|1|BA|G|474
4V4T|1|BA|U|475
4V4T|1|BA|G|476
4V4T|1|BA|A|477
4V4T|1|BA|A|478
4V4T|1|BA|A|479
4V4T|1|BA|A|480
4V4T|1|BA|G|481
4V4T|1|BA|A|482
4V4T|1|BA|A|483
4V4T|1|BA|C|484
*
4V4T|1|BA|G|496
4V4T|1|BA|A|497
4V4T|1|BA|G|498
4V4T|1|BA|U|499
4V4T|1|BA|G|500
4V4T|1|BA|A|501
4V4T|1|BA|A|502
4V4T|1|BA|A|503
4V4T|1|BA|U|504
4V4T|1|BA|A|505
4V4T|1|BA|G|506
4V4T|1|BA|A|507
4V4T|1|BA|G|508
4V4T|1|BA|C|509
4V4T|1|BA|C|510
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BU
- 50S ribosomal protein L20
- Chain BW
- 50S ribosomal protein L22
- Chain BY
- 50S ribosomal protein 24
Coloring options: