J3_4V4V_006

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

4V4V|1|AA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4V_006 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.169

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V4V|1|AA|U|1073
4V4V|1|AA|G|1074
*
4V4V|1|AA|U|1083
4V4V|1|AA|G|1084
4V4V|1|AA|U|1085
4V4V|1|AA|U|1086
4V4V|1|AA|G|1087
*
4V4V|1|AA|C|1098
4V4V|1|AA|G|1099
4V4V|1|AA|C|1100
4V4V|1|AA|A|1101
4V4V|1|AA|A|1102

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal subunit protein S2

Chain AE

30S ribosomal subunit protein S5