J3_4V4V_010

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CAGGAU*AUUUAAAG*CACUG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|C|1053
4V4V|1|B0|A|1054
4V4V|1|B0|G|1055
4V4V|1|B0|G|1056
4V4V|1|B0|A|1057
4V4V|1|B0|U|1058
*
4V4V|1|B0|A|1080
4V4V|1|B0|U|1081
4V4V|1|B0|U|1082
4V4V|1|B0|U|1083
4V4V|1|B0|A|1084
4V4V|1|B0|A|1085
4V4V|1|B0|A|1086
4V4V|1|B0|G|1087
*
4V4V|1|B0|C|1102
4V4V|1|B0|A|1103
4V4V|1|B0|C|1104
4V4V|1|B0|U|1105
4V4V|1|B0|G|1106

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L7/L12

Chain B5

50S ribosomal protein L7/L12

Chain BG

50S ribosomal protein L11