J3_4V4V_013

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

ACUG*CUAAC*GGACAGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|A|2090
4V4V|1|B0|C|2091
4V4V|1|B0|U|2092
4V4V|1|B0|G|2093
*
4V4V|1|B0|C|2196
4V4V|1|B0|U|2197
4V4V|1|B0|A|2198
4V4V|1|B0|A|2199
4V4V|1|B0|C|2200
*
4V4V|1|B0|G|2223
4V4V|1|B0|G|2224
4V4V|1|B0|A|2225
4V4V|1|B0|C|2226
4V4V|1|B0|A|2227
4V4V|1|B0|G|2228
4V4V|1|B0|U|2229

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BA

50S ribosomal protein L2

Chain BF

50S ribosomal protein L9