J3_4V4V_017

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCCGUAG*CGCC*GGAAC

Length

16 nucleotides

Bulged bases

4V4V|1|B9|G|13, 4V4V|1|B9|A|15, 4V4V|1|B9|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B9|G|10
4V4V|1|B9|C|11
4V4V|1|B9|C|12
4V4V|1|B9|G|13
4V4V|1|B9|U|14
4V4V|1|B9|A|15
4V4V|1|B9|G|16
*
4V4V|1|B9|C|68
4V4V|1|B9|G|69
4V4V|1|B9|C|70
4V4V|1|B9|C|71
*
4V4V|1|B9|G|105
4V4V|1|B9|G|106
4V4V|1|B9|A|108
4V4V|1|B9|A|109
4V4V|1|B9|C|110

Current chains

Chain B9

5S ribosomal RNA

Nearby chains

Chain B0

Large subunit ribosomal RNA; LSU rRNA

Chain BM

50S ribosomal protein L18