J3_4V4V_018

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCCUAAC*GGGGAAUAUUG*CAGC

Length

22 nucleotides

Bulged bases

4V4V|1|AA|C|48, 4V4V|1|AA|A|50, 4V4V|1|AA|A|51, 4V4V|1|AA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|AA|G|46
4V4V|1|AA|C|47
4V4V|1|AA|C|48
4V4V|1|AA|U|49
4V4V|1|AA|A|50
4V4V|1|AA|A|51
4V4V|1|AA|C|52
*
4V4V|1|AA|G|359
4V4V|1|AA|G|360
4V4V|1|AA|G|361
4V4V|1|AA|G|362
4V4V|1|AA|A|363
4V4V|1|AA|A|364
4V4V|1|AA|U|365
4V4V|1|AA|A|366
4V4V|1|AA|U|367
4V4V|1|AA|U|368
4V4V|1|AA|G|369
*
4V4V|1|AA|C|392
4V4V|1|AA|A|393
4V4V|1|AA|G|394
4V4V|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal subunit protein S12

Chain AP

30S ribosomal subunit protein S16