J3_4V4V_020

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UAGAAU*GGAAUACCGGUGG*CGG

Length

22 nucleotides

Bulged bases

4V4V|1|AA|A|718, 4V4V|1|AA|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|AA|U|672
4V4V|1|AA|A|673
4V4V|1|AA|G|674
4V4V|1|AA|A|675
4V4V|1|AA|A|676
4V4V|1|AA|U|677
*
4V4V|1|AA|G|713
4V4V|1|AA|G|714
4V4V|1|AA|A|715
4V4V|1|AA|A|716
4V4V|1|AA|U|717
4V4V|1|AA|A|718
4V4V|1|AA|C|719
4V4V|1|AA|C|720
4V4V|1|AA|G|721
4V4V|1|AA|G|722
4V4V|1|AA|U|723
4V4V|1|AA|G|724
4V4V|1|AA|G|725
*
4V4V|1|AA|C|732
4V4V|1|AA|G|733
4V4V|1|AA|G|734

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S ribosomal subunit protein S6

Chain AK

30S ribosomal subunit protein S11

Chain AR

30S ribosomal subunit protein S18

Chain BA

50S ribosomal protein L2