J3_4V4V_029

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGAAG*UUGAC*GGUGCGAAAGCAGG

Length

24 nucleotides

Bulged bases

4V4V|1|B0|A|2288, 4V4V|1|B0|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|C|2285
4V4V|1|B0|G|2286
4V4V|1|B0|A|2287
4V4V|1|B0|A|2288
4V4V|1|B0|G|2289
*
4V4V|1|B0|U|2343
4V4V|1|B0|U|2344
4V4V|1|B0|G|2345
4V4V|1|B0|A|2346
4V4V|1|B0|C|2347
*
4V4V|1|B0|G|2370
4V4V|1|B0|G|2371
4V4V|1|B0|U|2372
4V4V|1|B0|G|2373
4V4V|1|B0|C|2374
4V4V|1|B0|G|2375
4V4V|1|B0|A|2376
4V4V|1|B0|A|2377
4V4V|1|B0|A|2378
4V4V|1|B0|G|2379
4V4V|1|B0|C|2380
4V4V|1|B0|A|2381
4V4V|1|B0|G|2382
4V4V|1|B0|G|2383

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L33

Chain BM

50S ribosomal protein L18

Chain BU

50S ribosomal protein L27