J3_4V4V_034
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GAAACCCGGUGAUCUA*UGGGG*CAAUCAAACCGGGAGAUAGC
- Length
- 41 nucleotides
- Bulged bases
- 4V4V|1|B0|U|686, 4V4V|1|B0|A|789, 4V4V|1|B0|U|790, 4V4V|1|B0|A|792, 4V4V|1|B0|G|801, 4V4V|1|B0|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4V|1|B0|G|674
4V4V|1|B0|A|675
4V4V|1|B0|A|676
4V4V|1|B0|A|677
4V4V|1|B0|C|678
4V4V|1|B0|C|679
4V4V|1|B0|C|680
4V4V|1|B0|G|681
4V4V|1|B0|G|682
4V4V|1|B0|U|683
4V4V|1|B0|G|684
4V4V|1|B0|A|685
4V4V|1|B0|U|686
4V4V|1|B0|C|687
4V4V|1|B0|U|688
4V4V|1|B0|A|689
*
4V4V|1|B0|U|773
4V4V|1|B0|G|774
4V4V|1|B0|G|775
4V4V|1|B0|G|776
4V4V|1|B0|G|777
*
4V4V|1|B0|C|787
4V4V|1|B0|A|788
4V4V|1|B0|A|789
4V4V|1|B0|U|790
4V4V|1|B0|C|791
4V4V|1|B0|A|792
4V4V|1|B0|A|793
4V4V|1|B0|A|794
4V4V|1|B0|C|795
4V4V|1|B0|C|796
4V4V|1|B0|G|797
4V4V|1|B0|G|798
4V4V|1|B0|G|799
4V4V|1|B0|A|800
4V4V|1|B0|G|801
4V4V|1|B0|A|802
4V4V|1|B0|U|803
4V4V|1|B0|A|804
4V4V|1|B0|G|805
4V4V|1|B0|C|806
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L4
- Chain BJ
- 50S ribosomal protein L15
Coloring options: