Loop J3_4V4V

3D structure

PDB id: 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å

Loop

Sequence: GCCGUAGCGCGGUGGUCCC*GAAACGCCGUAGCGCCGAUGGUAG*CGAGAGUAGGAAC
Length: 56 nucleotides
Bulged bases: 4V4V|1|B9|G|13, 4V4V|1|B9|A|15, 4V4V|1|B9|U|25
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4V|1|B9|G|10
4V4V|1|B9|C|11
4V4V|1|B9|C|12
4V4V|1|B9|G|13
4V4V|1|B9|U|14
4V4V|1|B9|A|15
4V4V|1|B9|G|16
4V4V|1|B9|C|17
4V4V|1|B9|G|18
4V4V|1|B9|C|19
4V4V|1|B9|G|20
4V4V|1|B9|G|21
4V4V|1|B9|U|22
4V4V|1|B9|G|23
4V4V|1|B9|G|24
4V4V|1|B9|U|25
4V4V|1|B9|C|26
4V4V|1|B9|C|27
4V4V|1|B9|C|28
*
4V4V|1|B9|G|56
4V4V|1|B9|A|57
4V4V|1|B9|A|58
4V4V|1|B9|A|59
4V4V|1|B9|C|60
4V4V|1|B9|G|61
4V4V|1|B9|C|62
4V4V|1|B9|C|63
4V4V|1|B9|G|64
4V4V|1|B9|U|65
4V4V|1|B9|A|66
4V4V|1|B9|G|67
4V4V|1|B9|C|68
4V4V|1|B9|G|69
4V4V|1|B9|C|70
4V4V|1|B9|C|71
4V4V|1|B9|G|72
4V4V|1|B9|A|73
4V4V|1|B9|U|74
4V4V|1|B9|G|75
4V4V|1|B9|G|76
4V4V|1|B9|U|77
4V4V|1|B9|A|78
4V4V|1|B9|G|79
*
4V4V|1|B9|C|97
4V4V|1|B9|G|98
4V4V|1|B9|A|99
4V4V|1|B9|G|100
4V4V|1|B9|A|101
4V4V|1|B9|G|102
4V4V|1|B9|U|103
4V4V|1|B9|A|104
4V4V|1|B9|G|105
4V4V|1|B9|G|106
4V4V|1|B9|A|108
4V4V|1|B9|A|109
4V4V|1|B9|C|110

Current chains

Chain B9: 5S ribosomal RNA

Nearby chains

Chain B0: Large subunit ribosomal RNA; LSU rRNA
Chain BD: 50S ribosomal protein L5
Chain BM: 50S ribosomal protein L18
Chain BT: 50S ribosomal protein L25

J3_4V4V_035