J3_4V4W_010

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGGAAG*CAGG*CCAG

Length

14 nucleotides

Bulged bases

4V4W|1|B0|G|1627

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4W_010 not in the Motif Atlas

Geometric match to J3_4V9F_005

Geometric discrepancy: 0.2203

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V4W|1|B0|C|1298
4V4W|1|B0|G|1299
4V4W|1|B0|G|1300
4V4W|1|B0|A|1301
4V4W|1|B0|A|1302
4V4W|1|B0|G|1303
*
4V4W|1|B0|C|1625
4V4W|1|B0|A|1626
4V4W|1|B0|G|1627
4V4W|1|B0|G|1628
*
4V4W|1|B0|C|1638
4V4W|1|B0|C|1639
4V4W|1|B0|A|1640
4V4W|1|B0|G|1642

Current chains

Chain B0

23S ribosomal RNA

Nearby chains