J3_4V4W_012

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUAUGC*GUUGG*UCGGGAGCUUCCUCGGAAGCGAAGUAA

Length

38 nucleotides

Bulged bases

4V4W|1|B0|U|1445, 4V4W|1|B0|U|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|U|1442
4V4W|1|B0|U|1443
4V4W|1|B0|A|1444
4V4W|1|B0|U|1445
4V4W|1|B0|G|1446
4V4W|1|B0|C|1447
*
4V4W|1|B0|G|1464
4V4W|1|B0|U|1465
4V4W|1|B0|U|1466
4V4W|1|B0|G|1467
4V4W|1|B0|G|1468
*
4V4W|1|B0|U|1523
4V4W|1|B0|C|1524
4V4W|1|B0|G|1525
4V4W|1|B0|G|1526
4V4W|1|B0|G|1527
4V4W|1|B0|A|1528
4V4W|1|B0|G|1529
4V4W|1|B0|C|1530
4V4W|1|B0|U|1531
4V4W|1|B0|U|1532
4V4W|1|B0|C|1533
4V4W|1|B0|C|1534
4V4W|1|B0|U|1535
4V4W|1|B0|C|1536
4V4W|1|B0|G|1537
4V4W|1|B0|G|1538
4V4W|1|B0|A|1539
4V4W|1|B0|A|1540
4V4W|1|B0|G|1541
4V4W|1|B0|C|1542
4V4W|1|B0|G|1543
4V4W|1|B0|A|1544
4V4W|1|B0|A|1545
4V4W|1|B0|G|1546
4V4W|1|B0|U|1547
4V4W|1|B0|A|1548
4V4W|1|B0|A|1549

Current chains

Chain B0

23S ribosomal RNA

Nearby chains