3D structure

PDB id
4V4W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
CACUG*CUAAC*GGACAGUG
Length
18 nucleotides
Bulged bases
4V4W|1|B0|U|2092
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4W|1|B0|C|2089
4V4W|1|B0|A|2090
4V4W|1|B0|C|2091
4V4W|1|B0|U|2092
4V4W|1|B0|G|2093
*
4V4W|1|B0|C|2196
4V4W|1|B0|U|2197
4V4W|1|B0|A|2198
4V4W|1|B0|A|2199
4V4W|1|B0|C|2200
*
4V4W|1|B0|G|2223
4V4W|1|B0|G|2224
4V4W|1|B0|A|2225
4V4W|1|B0|C|2226
4V4W|1|B0|A|2227
4V4W|1|B0|G|2228
4V4W|1|B0|U|2229
4V4W|1|B0|G|2230

Current chains

Chain B0
23S ribosomal RNA

Nearby chains

Chain BA
50S ribosomal protein L2
Chain BF
50S ribosomal protein L9

Coloring options:

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