J3_4V4W_015

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

ACAUCC*GGUAUG*CAUUUAAAGU

Length

22 nucleotides

Bulged bases

4V4W|1|B0|A|2518

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|A|2516
4V4W|1|B0|C|2517
4V4W|1|B0|A|2518
4V4W|1|B0|U|2519
4V4W|1|B0|C|2520
4V4W|1|B0|C|2521
*
4V4W|1|B0|G|2544
4V4W|1|B0|G|2545
4V4W|1|B0|U|2546
4V4W|1|B0|A|2547
4V4W|1|B0|U|2548
4V4W|1|B0|G|2549
*
4V4W|1|B0|C|2559
4V4W|1|B0|A|2560
4V4W|1|B0|U|2561
4V4W|1|B0|U|2562
4V4W|1|B0|U|2563
4V4W|1|B0|A|2564
4V4W|1|B0|A|2565
4V4W|1|B0|A|2566
4V4W|1|B0|G|2567
4V4W|1|B0|U|2568

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AU

Transfer RNA; tRNA

Chain BB

50S ribosomal protein L3

Chain BI

50S ribosomal protein L14