J3_4V4W_018

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCACAAGC*GCUAGUAA*UGAAUACGUUCCC

Length

29 nucleotides

Bulged bases

4V4W|1|AA|U|1381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|AA|G|933
4V4W|1|AA|C|934
4V4W|1|AA|A|935
4V4W|1|AA|C|936
4V4W|1|AA|A|937
4V4W|1|AA|A|938
4V4W|1|AA|G|939
4V4W|1|AA|C|940
*
4V4W|1|AA|G|1343
4V4W|1|AA|C|1344
4V4W|1|AA|U|1345
4V4W|1|AA|A|1346
4V4W|1|AA|G|1347
4V4W|1|AA|U|1348
4V4W|1|AA|A|1349
4V4W|1|AA|A|1350
*
4V4W|1|AA|U|1372
4V4W|1|AA|G|1373
4V4W|1|AA|A|1374
4V4W|1|AA|A|1375
4V4W|1|AA|U|1376
4V4W|1|AA|A|1377
4V4W|1|AA|C|1378
4V4W|1|AA|G|1379
4V4W|1|AA|U|1380
4V4W|1|AA|U|1381
4V4W|1|AA|C|1382
4V4W|1|AA|C|1383
4V4W|1|AA|C|1384

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal subunit protein S7

Chain AI

30S ribosomal subunit protein S9

Chain AV

Transfer RNA; tRNA

Chain AW

Transfer RNA; tRNA