J3_4V4W_020

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUAU*AGACUGC*GAGGAAGGUGG

Length

22 nucleotides

Bulged bases

4V4W|1|AA|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|AA|U|1115
4V4W|1|AA|U|1116
4V4W|1|AA|A|1117
4V4W|1|AA|U|1118
*
4V4W|1|AA|A|1155
4V4W|1|AA|G|1156
4V4W|1|AA|A|1157
4V4W|1|AA|C|1158
4V4W|1|AA|U|1159
4V4W|1|AA|G|1160
4V4W|1|AA|C|1161
*
4V4W|1|AA|G|1175
4V4W|1|AA|A|1176
4V4W|1|AA|G|1177
4V4W|1|AA|G|1178
4V4W|1|AA|A|1179
4V4W|1|AA|A|1180
4V4W|1|AA|G|1181
4V4W|1|AA|G|1182
4V4W|1|AA|U|1183
4V4W|1|AA|G|1184
4V4W|1|AA|G|1185

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal subunit protein S2

Chain AI

30S ribosomal subunit protein S9

Chain AJ

30S ribosomal subunit protein S10