Loop J3_4V4W

3D structure

PDB id: 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å

Loop

Sequence: GUGUGUGUGUUGUGGAAGC*GCGCGAUACAG*CGUACACAAUGCACAUGC
Length: 48 nucleotides
Bulged bases: 4V4W|1|B0|G|297, 4V4W|1|B0|G|298, 4V4W|1|B0|G|301, 4V4W|1|B0|U|321
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4W|1|B0|G|283
4V4W|1|B0|U|284
4V4W|1|B0|G|285
4V4W|1|B0|U|286
4V4W|1|B0|G|287
4V4W|1|B0|U|288
4V4W|1|B0|G|289
4V4W|1|B0|U|290
4V4W|1|B0|G|291
4V4W|1|B0|U|292
4V4W|1|B0|U|293
4V4W|1|B0|G|295
4V4W|1|B0|U|296
4V4W|1|B0|G|297
4V4W|1|B0|G|298
4V4W|1|B0|A|299
4V4W|1|B0|A|300
4V4W|1|B0|G|301
4V4W|1|B0|C|302
*
4V4W|1|B0|G|315
4V4W|1|B0|C|316
4V4W|1|B0|G|317
4V4W|1|B0|C|318
4V4W|1|B0|G|319
4V4W|1|B0|A|320
4V4W|1|B0|U|321
4V4W|1|B0|A|322
4V4W|1|B0|C|323
4V4W|1|B0|A|324
4V4W|1|B0|G|325
*
4V4W|1|B0|C|337
4V4W|1|B0|G|338
4V4W|1|B0|U|339
4V4W|1|B0|A|340
4V4W|1|B0|C|341
4V4W|1|B0|A|342
4V4W|1|B0|C|343
4V4W|1|B0|A|347
4V4W|1|B0|A|348
4V4W|1|B0|U|349
4V4W|1|B0|G|350
4V4W|1|B0|C|351
4V4W|1|B0|A|352
4V4W|1|B0|C|353
4V4W|1|B0|A|354
4V4W|1|B0|U|355
4V4W|1|B0|G|356
4V4W|1|B0|C|357

Current chains

Chain B0: 23S ribosomal RNA

Nearby chains

Chain BC: 50S ribosomal protein L4
Chain BJ: 50S ribosomal protein L15
Chain BS: 50S ribosomal protein L24

J3_4V4W_022