J3_4V4W_023

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CAAG*CGAAGGGAAACCGAG*CGUUAAG

Length

26 nucleotides

Bulged bases

4V4W|1|B0|A|603, 4V4W|1|B0|U|653, 4V4W|1|B0|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|C|601
4V4W|1|B0|A|602
4V4W|1|B0|A|603
4V4W|1|B0|G|604
*
4V4W|1|B0|C|624
4V4W|1|B0|G|625
4V4W|1|B0|A|626
4V4W|1|B0|A|627
4V4W|1|B0|G|628
4V4W|1|B0|G|629
4V4W|1|B0|G|630
4V4W|1|B0|A|631
4V4W|1|B0|A|632
4V4W|1|B0|A|633
4V4W|1|B0|C|634
4V4W|1|B0|C|635
4V4W|1|B0|G|636
4V4W|1|B0|A|637
4V4W|1|B0|G|638
*
4V4W|1|B0|C|650
4V4W|1|B0|G|651
4V4W|1|B0|U|652
4V4W|1|B0|U|653
4V4W|1|B0|A|654
4V4W|1|B0|A|655
4V4W|1|B0|G|656

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L15