3D structure

PDB id
4V4W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GUGAUCUA*UGGGGG*CCAAUCAAAC
Length
24 nucleotides
Bulged bases
4V4W|1|B0|U|686, 4V4W|1|B0|A|789, 4V4W|1|B0|U|790, 4V4W|1|B0|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4W|1|B0|G|682
4V4W|1|B0|U|683
4V4W|1|B0|G|684
4V4W|1|B0|A|685
4V4W|1|B0|U|686
4V4W|1|B0|C|687
4V4W|1|B0|U|688
4V4W|1|B0|A|689
*
4V4W|1|B0|U|773
4V4W|1|B0|G|774
4V4W|1|B0|G|775
4V4W|1|B0|G|776
4V4W|1|B0|G|777
4V4W|1|B0|G|778
*
4V4W|1|B0|C|786
4V4W|1|B0|C|787
4V4W|1|B0|A|788
4V4W|1|B0|A|789
4V4W|1|B0|U|790
4V4W|1|B0|C|791
4V4W|1|B0|A|792
4V4W|1|B0|A|793
4V4W|1|B0|A|794
4V4W|1|B0|C|795

Current chains

Chain B0
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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