J3_4V4W_028

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAACG*CGUUGAU*AAUGAAC

Length

19 nucleotides

Bulged bases

4V4W|1|B0|U|2833, 4V4W|1|B0|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|2812
4V4W|1|B0|A|2813
4V4W|1|B0|A|2814
4V4W|1|B0|C|2815
4V4W|1|B0|G|2816
*
4V4W|1|B0|C|2830
4V4W|1|B0|G|2831
4V4W|1|B0|U|2832
4V4W|1|B0|U|2833
4V4W|1|B0|G|2834
4V4W|1|B0|A|2835
4V4W|1|B0|U|2836
*
4V4W|1|B0|A|2882
4V4W|1|B0|A|2883
4V4W|1|B0|U|2884
4V4W|1|B0|G|2885
4V4W|1|B0|A|2886
4V4W|1|B0|A|2887
4V4W|1|B0|C|2888

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BQ

50S ribosomal protein L22

Chain BZ

50S ribosomal protein L32