J3_4V4W_033

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUGUGGAAGC*GCGCGAUACAG*CGUACACA

Length

29 nucleotides

Bulged bases

4V4W|1|B0|G|297, 4V4W|1|B0|G|298, 4V4W|1|B0|G|301, 4V4W|1|B0|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|U|292
4V4W|1|B0|U|293
4V4W|1|B0|G|295
4V4W|1|B0|U|296
4V4W|1|B0|G|297
4V4W|1|B0|G|298
4V4W|1|B0|A|299
4V4W|1|B0|A|300
4V4W|1|B0|G|301
4V4W|1|B0|C|302
*
4V4W|1|B0|G|315
4V4W|1|B0|C|316
4V4W|1|B0|G|317
4V4W|1|B0|C|318
4V4W|1|B0|G|319
4V4W|1|B0|A|320
4V4W|1|B0|U|321
4V4W|1|B0|A|322
4V4W|1|B0|C|323
4V4W|1|B0|A|324
4V4W|1|B0|G|325
*
4V4W|1|B0|C|337
4V4W|1|B0|G|338
4V4W|1|B0|U|339
4V4W|1|B0|A|340
4V4W|1|B0|C|341
4V4W|1|B0|A|342
4V4W|1|B0|C|343
4V4W|1|B0|A|347

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L15

Chain BS

50S ribosomal protein L24