J3_4V4W_036
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GCCGUAGCGCGGUGGUCCC*GAAACGCCGUAGCGCCGAUGGUAG*CGAGAGUAGGAAC
- Length
- 56 nucleotides
- Bulged bases
- 4V4W|1|B9|G|13, 4V4W|1|B9|U|14, 4V4W|1|B9|A|15, 4V4W|1|B9|U|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4W|1|B9|G|10
4V4W|1|B9|C|11
4V4W|1|B9|C|12
4V4W|1|B9|G|13
4V4W|1|B9|U|14
4V4W|1|B9|A|15
4V4W|1|B9|G|16
4V4W|1|B9|C|17
4V4W|1|B9|G|18
4V4W|1|B9|C|19
4V4W|1|B9|G|20
4V4W|1|B9|G|21
4V4W|1|B9|U|22
4V4W|1|B9|G|23
4V4W|1|B9|G|24
4V4W|1|B9|U|25
4V4W|1|B9|C|26
4V4W|1|B9|C|27
4V4W|1|B9|C|28
*
4V4W|1|B9|G|56
4V4W|1|B9|A|57
4V4W|1|B9|A|58
4V4W|1|B9|A|59
4V4W|1|B9|C|60
4V4W|1|B9|G|61
4V4W|1|B9|C|62
4V4W|1|B9|C|63
4V4W|1|B9|G|64
4V4W|1|B9|U|65
4V4W|1|B9|A|66
4V4W|1|B9|G|67
4V4W|1|B9|C|68
4V4W|1|B9|G|69
4V4W|1|B9|C|70
4V4W|1|B9|C|71
4V4W|1|B9|G|72
4V4W|1|B9|A|73
4V4W|1|B9|U|74
4V4W|1|B9|G|75
4V4W|1|B9|G|76
4V4W|1|B9|U|77
4V4W|1|B9|A|78
4V4W|1|B9|G|79
*
4V4W|1|B9|C|97
4V4W|1|B9|G|98
4V4W|1|B9|A|99
4V4W|1|B9|G|100
4V4W|1|B9|A|101
4V4W|1|B9|G|102
4V4W|1|B9|U|103
4V4W|1|B9|A|104
4V4W|1|B9|G|105
4V4W|1|B9|G|106
4V4W|1|B9|A|108
4V4W|1|B9|A|109
4V4W|1|B9|C|110
Current chains
- Chain B9
- 5S ribosomal RNA
Nearby chains
- Chain B0
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 50S ribosomal protein L5
- Chain BK
- 50S ribosomal protein L16
- Chain BM
- 50S ribosomal protein L18
- Chain BT
- 50S ribosomal protein L25
- Chain BU
- 50S ribosomal protein L27
Coloring options: