J3_4V4X_023

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V4X|1|BA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4X_023 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1321

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4V4X|1|BA|C|2517
4V4X|1|BA|A|2518
4V4X|1|BA|U|2519
4V4X|1|BA|C|2520
*
4V4X|1|BA|G|2545
4V4X|1|BA|U|2546
4V4X|1|BA|U|2547
*
4V4X|1|BA|A|2561
4V4X|1|BA|U|2562
4V4X|1|BA|U|2563
4V4X|1|BA|A|2564
4V4X|1|BA|A|2565
4V4X|1|BA|A|2566
4V4X|1|BA|G|2567

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein L36

Chain BM

50S ribosomal protein L13

Chain BN

50S ribosomal protein L14