J3_4V4Y_005

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Y_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.2186

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4V4Y|1|AA|C|936
4V4Y|1|AA|A|937
4V4Y|1|AA|A|938
4V4Y|1|AA|G|939
*
4V4Y|1|AA|C|1344
4V4Y|1|AA|U|1345
4V4Y|1|AA|A|1346
4V4Y|1|AA|G|1347
4V4Y|1|AA|U|1348
4V4Y|1|AA|A|1349
4V4Y|1|AA|A|1350
*
4V4Y|1|AA|U|1372
4V4Y|1|AA|G|1373
4V4Y|1|AA|A|1374
4V4Y|1|AA|A|1375
4V4Y|1|AA|U|1376
4V4Y|1|AA|A|1377
4V4Y|1|AA|C|1378
4V4Y|1|AA|G|1379

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain AJ

30S ribosomal protein S7

Chain AL

30S ribosomal protein S9