J3_4V4Y_014

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

4V4Y|1|BA|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Y_014 not in the Motif Atlas

Homologous match to J3_7A0S_002

Geometric discrepancy: 0.3062

The information below is about J3_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.1

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

4V4Y|1|BA|A|56
4V4Y|1|BA|C|57
*
4V4Y|1|BA|G|70
4V4Y|1|BA|A|71
4V4Y|1|BA|U|72
4V4Y|1|BA|A|73
4V4Y|1|BA|A|74
4V4Y|1|BA|G|75
4V4Y|1|BA|C|76
*
4V4Y|1|BA|G|110
4V4Y|1|BA|A|111
4V4Y|1|BA|U|112
4V4Y|1|BA|G|113
4V4Y|1|BA|U|114

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L29

Chain B6

50S ribosomal protein L34

Chain BW

50S ribosomal protein L23