J3_4V4Y_021

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUUG*CUAAC*GGACAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Y_021 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.299

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V4Y|1|BA|G|2090
4V4Y|1|BA|U|2091
4V4Y|1|BA|U|2092
4V4Y|1|BA|G|2093
*
4V4Y|1|BA|C|2196
4V4Y|1|BA|U|2197
4V4Y|1|BA|A|2198
4V4Y|1|BA|A|2199
4V4Y|1|BA|C|2205
*
4V4Y|1|BA|G|2219
4V4Y|1|BA|G|2224
4V4Y|1|BA|A|2225
4V4Y|1|BA|C|2226
4V4Y|1|BA|A|2227
4V4Y|1|BA|G|2228
4V4Y|1|BA|C|2229

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L31

Chain BD

50S ribosomal protein L2

Chain BK

50S ribosomal protein L9