J3_4V4Y_029
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4V4Y|1|BA|G|500, 4V4Y|1|BA|U|504, 4V4Y|1|BA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4Y_029 not in the Motif Atlas
- Geometric match to J3_5TBW_062
- Geometric discrepancy: 0.3022
- The information below is about J3_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4Y|1|BA|G|30
4V4Y|1|BA|C|31
*
4V4Y|1|BA|G|474
4V4Y|1|BA|U|475
4V4Y|1|BA|G|476
4V4Y|1|BA|A|477
4V4Y|1|BA|A|478
4V4Y|1|BA|A|479
4V4Y|1|BA|A|480
4V4Y|1|BA|G|481
4V4Y|1|BA|A|482
4V4Y|1|BA|A|483
4V4Y|1|BA|C|484
*
4V4Y|1|BA|G|496
4V4Y|1|BA|A|497
4V4Y|1|BA|G|498
4V4Y|1|BA|U|499
4V4Y|1|BA|G|500
4V4Y|1|BA|A|501
4V4Y|1|BA|A|502
4V4Y|1|BA|A|503
4V4Y|1|BA|U|504
4V4Y|1|BA|A|505
4V4Y|1|BA|G|506
4V4Y|1|BA|A|507
4V4Y|1|BA|G|508
4V4Y|1|BA|C|509
4V4Y|1|BA|C|510
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BT
- 50S ribosomal protein L20
- Chain BV
- 50S ribosomal protein L22
- Chain BW
- 50S ribosomal protein L23
- Chain BX
- 50S ribosomal protein L24
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