J3_4V4Z_021

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4V4Z|1|BA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Z_021 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.2018

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V4Z|1|BA|G|1344
4V4Z|1|BA|C|1345
4V4Z|1|BA|G|1346
4V4Z|1|BA|G|1347
4V4Z|1|BA|G|1348
4V4Z|1|BA|A|1349
4V4Z|1|BA|C|1350
*
4V4Z|1|BA|G|1381
4V4Z|1|BA|G|1382
4V4Z|1|BA|C|1383
4V4Z|1|BA|A|1384
4V4Z|1|BA|G|1385
*
4V4Z|1|BA|C|1402
4V4Z|1|BA|C|1403

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L34