J3_4V4Z_022

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GUUG*CUAAC*GGACAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Z_022 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.5448

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V4Z|1|BA|G|2090
4V4Z|1|BA|U|2091
4V4Z|1|BA|U|2092
4V4Z|1|BA|G|2093
*
4V4Z|1|BA|C|2196
4V4Z|1|BA|U|2197
4V4Z|1|BA|A|2198
4V4Z|1|BA|A|2199
4V4Z|1|BA|C|2205
*
4V4Z|1|BA|G|2219
4V4Z|1|BA|G|2224
4V4Z|1|BA|A|2225
4V4Z|1|BA|C|2226
4V4Z|1|BA|A|2227
4V4Z|1|BA|G|2228
4V4Z|1|BA|C|2229

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L31

Chain BD

50S RIBOSOMAL PROTEIN L2

Chain BK

50S RIBOSOMAL PROTEIN L9