J3_4V4Z_027

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V4Z|1|AA|A|50, 4V4Z|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Z_027 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1664

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V4Z|1|AA|G|46
4V4Z|1|AA|C|47
4V4Z|1|AA|C|48
4V4Z|1|AA|U|49
4V4Z|1|AA|A|50
4V4Z|1|AA|A|51
4V4Z|1|AA|G|52
*
4V4Z|1|AA|U|359
4V4Z|1|AA|A|360
4V4Z|1|AA|G|361
4V4Z|1|AA|G|362
4V4Z|1|AA|A|363
4V4Z|1|AA|A|364
4V4Z|1|AA|U|365
4V4Z|1|AA|C|366
4V4Z|1|AA|U|367
*
4V4Z|1|AA|A|393
4V4Z|1|AA|G|394
4V4Z|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AO

30S ribosomal protein S12

Chain AS

30S ribosomal protein S16