J3_4V4Z_030

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CCUCG*CGAUAGCGCACCAGUAC*GGAAAGG

Length

29 nucleotides

Bulged bases

4V4Z|1|BA|C|34, 4V4Z|1|BA|U|448, 4V4Z|1|BA|C|455, 4V4Z|1|BA|C|456, 4V4Z|1|BA|A|457, 4V4Z|1|BA|U|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Z_030 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.5817

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4V4Z|1|BA|C|31
4V4Z|1|BA|C|32
4V4Z|1|BA|U|33
4V4Z|1|BA|C|34
4V4Z|1|BA|G|35
*
4V4Z|1|BA|C|445
4V4Z|1|BA|G|446
4V4Z|1|BA|A|447
4V4Z|1|BA|U|448
4V4Z|1|BA|A|449
4V4Z|1|BA|G|450
4V4Z|1|BA|C|451
4V4Z|1|BA|G|452
4V4Z|1|BA|C|453
4V4Z|1|BA|A|454
4V4Z|1|BA|C|455
4V4Z|1|BA|C|456
4V4Z|1|BA|A|457
4V4Z|1|BA|G|458
4V4Z|1|BA|U|459
4V4Z|1|BA|A|460
4V4Z|1|BA|C|461
*
4V4Z|1|BA|G|468
4V4Z|1|BA|G|469
4V4Z|1|BA|A|470
4V4Z|1|BA|A|471
4V4Z|1|BA|A|472
4V4Z|1|BA|G|473
4V4Z|1|BA|G|474

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L34

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BT

50S RIBOSOMAL PROTEIN L20

Chain BW

50S RIBOSOMAL PROTEIN L23