J3_4V4Z_034

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

4V4Z|1|AA|U|1085, 4V4Z|1|AA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Z_034 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.3422

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4V4Z|1|AA|U|1073
4V4Z|1|AA|G|1074
*
4V4Z|1|AA|U|1083
4V4Z|1|AA|G|1084
4V4Z|1|AA|U|1085
4V4Z|1|AA|U|1086
*
4V4Z|1|AA|G|1099
4V4Z|1|AA|C|1100
4V4Z|1|AA|A|1101
4V4Z|1|AA|A|1102

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AE

30S ribosomal protein S2

Chain AH

30S ribosomal protein S5