3D structure

PDB id
4V50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.22 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
4V50|1|CA|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V50_029 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.0846
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V50|1|CA|U|672
4V50|1|CA|A|673
*
4V50|1|CA|U|717
4V50|1|CA|A|718
4V50|1|CA|C|719
4V50|1|CA|C|720
4V50|1|CA|G|721
4V50|1|CA|G|722
4V50|1|CA|U|723
4V50|1|CA|G|724
4V50|1|CA|G|725
*
4V50|1|CA|C|732
4V50|1|CA|G|733
4V50|1|CA|G|734

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CF
30S ribosomal protein S6
Chain CK
30S ribosomal protein S11
Chain CO
30S ribosomal protein S15
Chain CR
30S ribosomal protein S18
Chain CU
30S ribosomal protein S21

Coloring options:


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