J3_4V50_059

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V50_059 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.5935

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4V50|1|BB|U|1344
4V50|1|BB|C|1345
4V50|1|BB|G|1346
4V50|1|BB|A|1347
4V50|1|BB|C|1348
4V50|1|BB|C|1349
4V50|1|BB|C|1350
*
4V50|1|BB|G|1381
4V50|1|BB|G|1382
4V50|1|BB|A|1383
4V50|1|BB|A|1384
4V50|1|BB|A|1385
*
4V50|1|BB|U|1402
4V50|1|BB|A|1403

Current chains

Chain BB

23S ribosomal RNA

Nearby chains