J3_4V51_016

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V51|1|BA|G|686, 4V51|1|BA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V51_016 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1163

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V51|1|BA|C|683
4V51|1|BA|G|684
4V51|1|BA|A|685
4V51|1|BA|G|686
4V51|1|BA|C|687
4V51|1|BA|U|688
4V51|1|BA|A|689
*
4V51|1|BA|U|773
4V51|1|BA|A|774
4V51|1|BA|G|775
*
4V51|1|BA|C|791
4V51|1|BA|G|792
4V51|1|BA|A|793
4V51|1|BA|G|794

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BD

50S RIBOSOMAL PROTEIN L2