J3_4V51_062

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V51|1|CA|C|48, 4V51|1|CA|A|50, 4V51|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V51_062 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0744

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V51|1|CA|G|46
4V51|1|CA|C|47
4V51|1|CA|C|48
4V51|1|CA|U|49
4V51|1|CA|A|50
4V51|1|CA|A|51
4V51|1|CA|G|52
*
4V51|1|CA|U|359
4V51|1|CA|A|360
4V51|1|CA|G|361
4V51|1|CA|G|362
4V51|1|CA|A|363
4V51|1|CA|A|364
4V51|1|CA|U|365
4V51|1|CA|C|366
4V51|1|CA|U|367
*
4V51|1|CA|A|393
4V51|1|CA|G|394
4V51|1|CA|C|395

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CP

30S RIBOSOMAL PROTEIN S16